PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010543897.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB_related
Protein Properties Length: 312aa    MW: 34126.8 Da    PI: 10.2307
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010543897.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.63.4e-144488147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +WT+eE++++++a +++  + Wk+I   +g  +t  q++s+ qky
   XP_010543897.1 44 RESWTEEEHDKFLEALQLFDRD-WKKIEDFVG-SKTVIQIRSHAQKY 88
                     789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.35E-173894IPR009057Homeodomain-like
PROSITE profilePS5129416.2913993IPR017930Myb domain
TIGRFAMsTIGR015579.5E-194291IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.9E-74294IPR009057Homeodomain-like
SMARTSM007171.1E-114391IPR001005SANT/Myb domain
PfamPF002497.6E-124488IPR001005SANT/Myb domain
CDDcd001672.57E-94689No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0032922Biological Processcircadian regulation of gene expression
GO:0043966Biological Processhistone H3 acetylation
GO:0046686Biological Processresponse to cadmium ion
GO:0048573Biological Processphotoperiodism, flowering
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MCARRRQRIR RAVNSTATAA SSASIAAEGS TKKVRKPYTI TKSRESWTEE EHDKFLEALQ  60
LFDRDWKKIE DFVGSKTVIQ IRSHAQKYFL KVQKNGTLAH VPPPRPKRKA AHPYPQKASK  120
NAQMPLQVST PFPSPSNILS GFAPWDESSV LINTGSSRVV STQDELATLR GAEGTGFACN  180
ITDSADIGSK GITNVSSPSA SGMGSVSRTL SGSEILIQGK PAPVLHGIPD FTEVYNFIGS  240
VFDPETKGHM KKLKEMDPIN FETVLLLMRN LTVNMSSPDF EPVRKVLSSY DMNTKLVAGS  300
SESLVKTSHV SS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00338DAPTransfer from AT3G09600Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010543897.10.0PREDICTED: protein REVEILLE 8-like
SwissprotQ8RWU31e-152RVE8_ARATH; Protein REVEILLE 8
TrEMBLD7L8A71e-152D7L8A7_ARALL; Myb family transcription factor
STRINGfgenesh2_kg.3__982__AT3G09600.11e-151(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM93032633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09600.11e-125MYB_related family protein